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s saprophyticus atcc  (ATCC)


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    ATCC s saprophyticus atcc
    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. <t>saprophyticus</t> ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.
    S Saprophyticus Atcc, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 769 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Genomic characterization of Staphylococcus epidermidis Se252 isolated from the rhizosphere of a Brazilian endemic plant"

    Article Title: Genomic characterization of Staphylococcus epidermidis Se252 isolated from the rhizosphere of a Brazilian endemic plant

    Journal: BMC Genomics

    doi: 10.1186/s12864-025-12211-7

    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. saprophyticus ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.
    Figure Legend Snippet: Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. saprophyticus ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.

    Techniques Used: Sequencing



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    s saprophyticus atcc  (ATCC)
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    ATCC s saprophyticus atcc
    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. <t>saprophyticus</t> ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.
    S Saprophyticus Atcc, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. <t>saprophyticus</t> ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.
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    atcc 15305  (ATCC)
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    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. <t>saprophyticus</t> ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.
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    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. <t>saprophyticus</t> ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.
    Staphylococcus Saprophyticus Atcc 15305, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/staphylococcus saprophyticus atcc 15305/product/ATCC
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    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. <t>saprophyticus</t> ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.
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    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. <t>saprophyticus</t> ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.
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    Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. saprophyticus ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.

    Journal: BMC Genomics

    Article Title: Genomic characterization of Staphylococcus epidermidis Se252 isolated from the rhizosphere of a Brazilian endemic plant

    doi: 10.1186/s12864-025-12211-7

    Figure Lengend Snippet: Virulence factors in S. epidermidis strains. (a) Presence/absence matrix of genes associated with adherence, exotoxin and exoenzyme production, biofilm formation, and immune evasion. Comparative strains from S. haemolyticus JSJC1435, S. saprophyticus ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data. Color codes are indicated in the figure legend. The cladogram corresponds to the phylogenomic clustering shown in Fig. b. Ψ: pseudogene; numbers > 1 indicate paralogs. (b) Pairwise alignment of IsaB from Sa8325 and IsaB-like from Se252 . Sp: signal peptide; Id: sequence identity. Below is an analysis of confidence, conservation, and quality of the amino acid residues composing IsaB-like proteins in S. epidermidis genomes. It can be observed that regions with the highest degree of conservation correspond to positions forming α-helices (red) and β-sheets (green) identified in the structure. (c) Predicted 3D structures of IsaB (Sa8325) and IsaB-like ( Se252 ) proteins using Robetta. (d) Error estimation (Å) of structural predictions shown in panel C. (e) Structural superposition of IsaB (green) and IsaB-like (orange) proteins from panel C using Dali. (f) Syntenic organization of genomic regions flanking isaB (Sa8325) and isaB -like ( Se252 ). Gene abbreviations: aur – aureolysin; clfB – clumping factor B; PM – phenol-soluble modulins; IS6 – transposase family IS6; arcCDBRargR – arginine deiminase pathway. Background shading indicates homologous genes.

    Article Snippet: Comparative strains from S. haemolyticus JSJC1435, S. saprophyticus ATCC 15,305, and S. epidermidis RP62A (highlighted in blue) were included based on VFDB data.

    Techniques: Sequencing